Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015793247.1_cds_XP_016432912.1_2838
CDS Infomation

[gene=LOC107759472] [db_xref=GeneID:107759472] [protein=phospholipase D beta 1-like] [protein_id=XP_016432912.1] [location=join(28880..29830,30299..30415,31396..31590,31806..32054,32132..32200,32293..32440,32767..32915,33636..34007,34158..34451)] [gbkey=CDS]
Sequence

ATGGCTCATTTGTCTTATTCTGATTCTATTAGTTCACAACATGGTCAAGGTGTCCAAGTT
CTCCCATTTAAGACATCTACAGGATCACTTAGGGTGTTGCTGTTACATGGAAATTTGGAT
ATTTGGGTGAGGGAGGCTAAGAATTTGCCAAACATGGATTTATTTCATAAGAAATTGGAT
AATTTGATTGGAGGATTGGCAAAACTTGGCAGTAAAAAGGAAGGCGCCACGAAGATTACT
AGTGATCCTTATGTTACAGTTTCAGTATCTAATGCTGTGGTTGCTAGAACATATGTGATT
ACCAATAGCGAAAATCCGGTTTGGATGCAACACTTTTATGTACCAGTAGCACATTATGCA
CCAGAAGTTCACTTTGTTGTTAAAGATAATGATGTTGTAGGATCTCAAATTATAGGTGCT
GTTGGAATTCCGGTAGAGCGACTATGTTCTGGTGAATTCATTGAGGGAACATTTCCAATT
CTAAATGGTAGTGGGAAGCCTTGTAAGGAAGGAGCTGTCTTGACTTTATCAATTCAATTC
ACTCCAATGGAGAGGGTACCTCTTTATTATGGTGGTGTAGGAGGAGATCACGAGTATAAG
GGTGTGCCGGGAACTTATTTCCCGCTCAGAAGAGGCGGAAAAGTAACACTTTATCAAGAT
GCTCATGTACCCGAAGGCAGCCTTCCGAATTTGTGGCTTGAAAATGGAGTGCAGTATAAG
CATGGACAGTGTTGGCAGGATATGTTCAATGCAATAAATCAGGCTCGTCGGTTGATTTAC
ATTACAGGATGGTCAGTGTACCACCTAGTTACACTTGTTAGGGATAATGGAAAAGCTGAG
GAAAGCATGTTAGGGGAAATTCTCAAGAGGAAATCCCAAGAAGGTGTGAGAGTACTGCTT
CTCATATGGGATGATCCTACCTCTTCGAAGAGCATCTTGGGATACAAAAGTGAAGGAATC
ATGGGAACTAGTGATGAAGAAACTCGTCGCTATTTTAAGCATTCTTCAGTGCACGTGCTA
CTTTGTCCCCGTTCTGCTGGAAAAGGGCACAGCTGGGTCAAAAAACAGGAAACTGGAACA
ATATACACACATCATCAGAAAACTGTAATAGTGGATGTGGATGCTGGTAATTACCAGAGA
AAGATTATCGCTTTCGTTGGTGGCCTTGATTTGTGCAAAGGGCGTTATGATACTCCACAA
CACCCTATCTTTAAAACATTGCAAAATGTGCACAAAGATGACTATCATCAGCCTAACTAC
ACGGGCCCTACTACCGGTTGTCCTAGAGAACCTTGGCATGATTTACATAGTCGGATCGAG
GGGCCTGCTGCATATGATGTCCTAACTAACTTCGAGGAGCGCTGGTTGAAGGCTTCAAAG
CGCCATGGACTTCAAAAGATGAAAGCTTCACAAGATGATGCATTACTCCAACTTGACAGG
ATTCCCGACATATTAAAAATAGCTGATGTCCCTTGCCTAGGAGAAGATGATGCAGATACG
TGGCACGTGCAGATTTTCCGGTCGATTGACTCCAACTCTGTTAAAGGTTTCCCCAAAGAT
CCCAAAGAAGCCACTAACAAGAATCTAGTTTGTGGCAAGAATGTGCTGATAGATATGAGC
ATACATACTGCCTATGTAAAGGCAATCCGAGCTGCCCAACATTTCATCTACATTGAGAAC
CAGTACTTCCTAGGGTCCTCATACAATTGGAATAACTACCAAGATTTAGGTGCAAATAAC
TTGATACCGATGGAGATTGCTCTAAAAATTGCCAACAAAATACGGGCAAATGAGAGGTTT
TCAGTATATATAATTGTTCCTATGTGGCCAGAGGGTGTTCCAACCAGTACTGCTACTCAG
AGAATACTTTTTTGGCAGCACAATACCATGCAGATGATGTATGAGACAATTTACAAAGCT
TTAGTAGAGGTAGGGCTGGAAAACACATATGAACCCCAAGACTATTTGAATTTCTTCTGC
CTTGGCAATCGCGAGGTTCAGGAAGATGGAAACAATACAGTTGTCAAAAGTTCTAAGCCA
ACTACACCTCAGGAACTCAGTCAGAAAAGTCGACGTTTTATGATATATGTACATTCAAAA
GGAATGATAGTGGATGATGAGTATGTTATATTGGGATCTGCAAACATTAATCAACGTTCT
CTGGAAGGCACCAGAGATACTGAAATTGCAATGGGTTCATATCAGCCCCATCATACATGG
GCAACCAAACACTCTCGACCACATGGACAGGTATACGGCTATAGGATGTCTCTGTGGGCA
GAGCACACGGGAACTCTTGAGCAATGTTTTGAGCATCCAGAGAGTCTTGAGTGTGTGAGA
CGGATAAGAGTATTTGGCGAACACAACTGGCTACAATACGCGGCTGATGAAGTAACTGAG
ATGAGAGGCCACCTTCTTAAGTATCCTGTTGAAGTTGATCGAACGGGAAAGGTCAAGTCA
CTACCTGGCTGTGAAACCTTCCCAGATATTGGAGGGAAGATAATAGGTACATTCACCGGC
GTTCAAGAAAATCTCACTATCTGA

Peptide Sequence

PEP ID

XP_016432912.1
PEP Infomation

PREDICTED: phospholipase D beta 1-like [Nicotiana tabacum]
Sequence

MAHLSYSDSISSQHGQGVQVLPFKTSTGSLRVLLLHGNLDIWVREAKNLPNMDLFHKKLD
NLIGGLAKLGSKKEGATKITSDPYVTVSVSNAVVARTYVITNSENPVWMQHFYVPVAHYA
PEVHFVVKDNDVVGSQIIGAVGIPVERLCSGEFIEGTFPILNGSGKPCKEGAVLTLSIQF
TPMERVPLYYGGVGGDHEYKGVPGTYFPLRRGGKVTLYQDAHVPEGSLPNLWLENGVQYK
HGQCWQDMFNAINQARRLIYITGWSVYHLVTLVRDNGKAEESMLGEILKRKSQEGVRVLL
LIWDDPTSSKSILGYKSEGIMGTSDEETRRYFKHSSVHVLLCPRSAGKGHSWVKKQETGT
IYTHHQKTVIVDVDAGNYQRKIIAFVGGLDLCKGRYDTPQHPIFKTLQNVHKDDYHQPNY
TGPTTGCPREPWHDLHSRIEGPAAYDVLTNFEERWLKASKRHGLQKMKASQDDALLQLDR
IPDILKIADVPCLGEDDADTWHVQIFRSIDSNSVKGFPKDPKEATNKNLVCGKNVLIDMS
IHTAYVKAIRAAQHFIYIENQYFLGSSYNWNNYQDLGANNLIPMEIALKIANKIRANERF
SVYIIVPMWPEGVPTSTATQRILFWQHNTMQMMYETIYKALVEVGLENTYEPQDYLNFFC
LGNREVQEDGNNTVVKSSKPTTPQELSQKSRRFMIYVHSKGMIVDDEYVILGSANINQRS
LEGTRDTEIAMGSYQPHHTWATKHSRPHGQVYGYRMSLWAEHTGTLEQCFEHPESLECVR
RIRVFGEHNWLQYAADEVTEMRGHLLKYPVEVDRTGKVKSLPGCETFPDIGGKIIGTFTG
VQENLTI

Transcript Sequence

Gene sequence data has not been registered.